Here is the association table of sample names and conditions, colored with respect to condition color used in figures.

File.names Conditions
SCV028 MOI_50
SCV029 MOI_500
SCV030 MOI_5000

The Aim of Distriburion Analysis

This part of document includes figures representing the distribution of labels associated with samples. Can give idea about percentage distributions of classes (like: “no signal”, “infection”, “infection&lysis”) and distribution of problematic samples (like: “dirt”, “dried out”, “multiple infections”)

Distibutions

Here once more the figures side by side

Distribution of DDOM

The Aim of Single Variable Analysis

This part of document includes single variable figures associated with samples. We focus on 5 parameters: maximum, shape, midpoint, infection time, start point. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases.

For each figure we include tables showing p-values from t.test, Mann-Whitney U Test (wilcox.test), ,ean differences between conditions and the effect size. The tables also show the sample size for each condition.

Maximum

ttest. adjusted p values

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 0.41808 93
MOI_500 1.00000 1.00000 0.48684 127
MOI_5000 0.41808 0.48684 1.00000 192
numSamples 93 127 192

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.97448 0.56034 93
MOI_500 0.97448 1.00000 0.72294 127
MOI_5000 0.56034 0.72294 1.00000 192
numSamples 93 127 192

Diffrence between means

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.06854 0.21344 93
MOI_500 0.06854 0.00000 0.14490 127
MOI_5000 0.21344 0.14490 0.00000 192
numSamples 93 127 192

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.797e-01 4.346e-01 4.289e-01 93
MOI_500 4.346e-01 3.886e-01 3.790e-01 127
MOI_5000 4.289e-01 3.790e-01 3.589e-01 192
numSamples 93 127 192

ttest. adjusted p values

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 46
MOI_500 1.00000 1.00000 1.00000 81
MOI_5000 1.00000 1.00000 1.00000 161
numSamples 46 81 161

Mann-Whitney U Test, adjusted p values

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 46
MOI_500 1.00000 1.00000 1.00000 81
MOI_5000 1.00000 1.00000 1.00000 161
numSamples 46 81 161

Diffrence between means

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.04122 0.01858 46
MOI_500 0.04122 0.00000 0.02263 81
MOI_5000 0.01858 0.02263 0.00000 161
numSamples 46 81 161

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 7.452e-01 6.287e-01 5.984e-01 46
MOI_500 6.287e-01 5.083e-01 4.660e-01 81
MOI_5000 5.984e-01 4.660e-01 4.012e-01 161
numSamples 46 81 161

ttest. adjusted p values

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 47
MOI_500 1.00000 1.00000 1.00000 46
MOI_5000 1.00000 1.00000 1.00000 31
numSamples 47 46 31

Mann-Whitney U Test, adjusted p values

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 1.00000 47
MOI_500 1.00000 1.00000 1.00000 46
MOI_5000 1.00000 1.00000 1.00000 31
numSamples 47 46 31

Diffrence between means

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.00273 0.02236 47
MOI_500 0.00273 0.00000 0.01963 46
MOI_5000 0.02236 0.01963 0.00000 31
numSamples 47 46 31

effect size needed for Power = 0.95 and sig.level = 0.05

Maximum Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 5.160e-01 4.966e-01 5.625e-01 47
MOI_500 4.966e-01 4.758e-01 5.392e-01 46
MOI_5000 5.625e-01 5.392e-01 5.997e-01 31
numSamples 47 46 31

Here are the figures side by side

Following is the violin graph representing the distribution of maximums

Slope

ttest. adjusted p values

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.01022 0.00000 93
MOI_500 0.01022 1.00000 0.00405 127
MOI_5000 0.00000 0.00405 1.00000 192
numSamples 93 127 192

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00822 0.00000 93
MOI_500 0.00822 1.00000 0.01376 127
MOI_5000 0.00000 0.01376 1.00000 192
numSamples 93 127 192

Diffrence between means

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.19023 0.46725 93
MOI_500 0.19023 0.00000 0.27702 127
MOI_5000 0.46725 0.27702 0.00000 192
numSamples 93 127 192

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.385e-01 2.472e-01 3.475e-01 93
MOI_500 2.472e-01 2.484e-01 3.275e-01 127
MOI_5000 3.475e-01 3.275e-01 3.605e-01 192
numSamples 93 127 192

ttest. adjusted p values

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.44400 0.01212 46
MOI_500 0.44400 1.00000 0.05346 81
MOI_5000 0.01212 0.05346 1.00000 161
numSamples 46 81 161

Mann-Whitney U Test, adjusted p values

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.24135 0.04746 46
MOI_500 0.24135 1.00000 0.71876 81
MOI_5000 0.04746 0.71876 1.00000 161
numSamples 46 81 161

Diffrence between means

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.12438 0.36456 46
MOI_500 0.12438 0.00000 0.24017 81
MOI_5000 0.36456 0.24017 0.00000 161
numSamples 46 81 161

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.237e-01 3.649e-01 5.036e-01 46
MOI_500 3.649e-01 3.022e-01 4.056e-01 81
MOI_5000 5.036e-01 4.056e-01 4.174e-01 161
numSamples 46 81 161

ttest. adjusted p values

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.15468 0.01920 47
MOI_500 0.15468 1.00000 1.00000 46
MOI_5000 0.01920 1.00000 1.00000 31
numSamples 47 46 31

Mann-Whitney U Test, adjusted p values

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.33238 0.03012 47
MOI_500 0.33238 1.00000 0.33238 46
MOI_5000 0.03012 0.33238 1.00000 31
numSamples 47 46 31

Diffrence between means

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.15749 0.19934 47
MOI_500 0.15749 0.00000 0.04186 46
MOI_5000 0.19934 0.04186 0.00000 31
numSamples 47 46 31

effect size needed for Power = 0.95 and sig.level = 0.05

Slope Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.241e-01 2.870e-01 2.191e-01 47
MOI_500 2.870e-01 3.883e-01 3.643e-01 46
MOI_5000 2.191e-01 3.643e-01 3.049e-01 31
numSamples 47 46 31

Here are the figures side by side

Following is the violin graph representing the distribution of slopes

Midpoint

ttest. adjusted p values

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00452 0.00000 93
MOI_500 0.00452 1.00000 0.00000 127
MOI_5000 0.00000 0.00000 1.00000 192
numSamples 93 127 192

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00016 0.00000 93
MOI_500 0.00016 1.00000 0.00000 127
MOI_5000 0.00000 0.00000 1.00000 192
numSamples 93 127 192

Diffrence between means

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.93976 4.17474 93
MOI_500 1.93976 0.00000 2.23498 127
MOI_5000 4.17474 2.23498 0.00000 192
numSamples 93 127 192

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.597e+00 2.239e+00 1.829e+00 93
MOI_500 2.239e+00 1.883e+00 1.473e+00 127
MOI_5000 1.829e+00 1.473e+00 1.055e+00 192
numSamples 93 127 192

ttest. adjusted p values

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.79490 0.00012 46
MOI_500 0.79490 1.00000 0.00291 81
MOI_5000 0.00012 0.00291 1.00000 161
numSamples 46 81 161

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.07520 0.00000 46
MOI_500 0.07520 1.00000 0.00000 81
MOI_5000 0.00000 0.00000 1.00000 161
numSamples 46 81 161

Diffrence between means

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.41243 1.78430 46
MOI_500 0.41243 0.00000 1.37187 81
MOI_5000 1.78430 1.37187 0.00000 161
numSamples 46 81 161

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.743e+00 1.843e+00 1.506e+00 46
MOI_500 1.843e+00 1.787e+00 1.435e+00 81
MOI_5000 1.506e+00 1.435e+00 1.075e+00 161
numSamples 46 81 161

ttest. adjusted p values

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.03416 0.00000 47
MOI_500 0.03416 1.00000 0.00405 46
MOI_5000 0.00000 0.00405 1.00000 31
numSamples 47 46 31

Mann-Whitney U Test, adjusted p values

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00776 0.00000 47
MOI_500 0.00776 1.00000 0.00003 46
MOI_5000 0.00000 0.00003 1.00000 31
numSamples 47 46 31

Diffrence between means

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 2.66349 5.99691 47
MOI_500 2.66349 0.00000 3.33341 46
MOI_5000 5.99691 3.33341 0.00000 31
numSamples 47 46 31

effect size needed for Power = 0.95 and sig.level = 0.05

Midpoint Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.123e+00 3.996e+00 3.951e+00 47
MOI_500 3.996e+00 3.861e+00 3.770e+00 46
MOI_5000 3.951e+00 3.770e+00 3.439e+00 31
numSamples 47 46 31

Here are the figures side by side

Following is the violin graph representing the distribution of midpoints

Infection Time

ttest. adjusted p values

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00558 0.00000 93
MOI_500 0.00558 1.00000 0.00312 127
MOI_5000 0.00000 0.00312 1.00000 192
numSamples 93 127 192

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00147 0.00000 93
MOI_500 0.00147 1.00000 0.00266 127
MOI_5000 0.00000 0.00266 1.00000 192
numSamples 93 127 192

Diffrence between means

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.12085 1.84725 93
MOI_500 1.12085 0.00000 0.72641 127
MOI_5000 1.84725 0.72641 0.00000 192
numSamples 93 127 192

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.613e+00 1.304e+00 1.083e+00 93
MOI_500 1.304e+00 9.854e-01 7.588e-01 127
MOI_5000 1.083e+00 7.588e-01 5.248e-01 192
numSamples 93 127 192

ttest. adjusted p values

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.10136 0.00510 46
MOI_500 0.10136 1.00000 0.10136 81
MOI_5000 0.00510 0.10136 1.00000 161
numSamples 46 81 161

Mann-Whitney U Test, adjusted p values

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.01062 0.00006 46
MOI_500 0.01062 1.00000 0.09432 81
MOI_5000 0.00006 0.09432 1.00000 161
numSamples 46 81 161

Diffrence between means

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.82888 1.30617 46
MOI_500 0.82888 0.00000 0.47729 81
MOI_5000 1.30617 0.47729 0.00000 161
numSamples 46 81 161

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.815e+00 1.456e+00 1.191e+00 46
MOI_500 1.456e+00 1.098e+00 8.362e-01 81
MOI_5000 1.191e+00 8.362e-01 5.753e-01 161
numSamples 46 81 161

ttest. adjusted p values

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.12958 0.00186 47
MOI_500 0.12958 1.00000 0.08502 46
MOI_5000 0.00186 0.08502 1.00000 31
numSamples 47 46 31

Mann-Whitney U Test, adjusted p values

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.19526 0.01254 47
MOI_500 0.19526 1.00000 0.19526 46
MOI_5000 0.01254 0.19526 1.00000 31
numSamples 47 46 31

Diffrence between means

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.17173 2.16110 47
MOI_500 1.17173 0.00000 0.98937 46
MOI_5000 2.16110 0.98937 0.00000 31
numSamples 47 46 31

effect size needed for Power = 0.95 and sig.level = 0.05

infection time Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.620e+00 2.285e+00 2.242e+00 47
MOI_500 2.285e+00 1.882e+00 1.704e+00 46
MOI_5000 2.242e+00 1.704e+00 1.293e+00 31
numSamples 47 46 31

Here are the figures side by side

Following is the violin graph representing the distribution of infection time

Start point

ttest. adjusted p values

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.06734 0.00000 93
MOI_500 0.06734 1.00000 0.00009 127
MOI_5000 0.00000 0.00009 1.00000 192
numSamples 93 127 192

Mann-Whitney U Test, adjusted p values

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.00824 0.00000 93
MOI_500 0.00824 1.00000 0.00000 127
MOI_5000 0.00000 0.00000 1.00000 192
numSamples 93 127 192

Diffrence between means

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 1.37934 3.25112 93
MOI_500 1.37934 0.00000 1.87178 127
MOI_5000 3.25112 1.87178 0.00000 192
numSamples 93 127 192

effect size needed for Power = 0.95 and sig.level = 0.05

Start point (inf + infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 2.681e+00 2.303e+00 1.897e+00 93
MOI_500 2.303e+00 1.925e+00 1.519e+00 127
MOI_5000 1.897e+00 1.519e+00 1.108e+00 192
numSamples 93 127 192

ttest. adjusted p values

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 1.00000 0.01908 46
MOI_500 1.00000 1.00000 0.02406 81
MOI_5000 0.01908 0.02406 1.00000 161
numSamples 46 81 161

Mann-Whitney U Test, adjusted p values

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.32786 0.00000 46
MOI_500 0.32786 1.00000 0.00000 81
MOI_5000 0.00000 0.00000 1.00000 161
numSamples 46 81 161

Diffrence between means

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 0.00201 1.13122 46
MOI_500 0.00201 0.00000 1.13322 81
MOI_5000 1.13122 1.13322 0.00000 161
numSamples 46 81 161

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (infLys)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.553e+00 1.812e+00 1.488e+00 46
MOI_500 1.812e+00 1.839e+00 1.492e+00 81
MOI_5000 1.488e+00 1.492e+00 1.132e+00 161
numSamples 46 81 161

ttest. adjusted p values

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.16612 0.00024 47
MOI_500 0.16612 1.00000 0.02544 46
MOI_5000 0.00024 0.02544 1.00000 31
numSamples 47 46 31

Mann-Whitney U Test, adjusted p values

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 1.00000 0.08662 0.00000 47
MOI_500 0.08662 1.00000 0.00045 46
MOI_5000 0.00000 0.00045 1.00000 31
numSamples 47 46 31

Diffrence between means

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 0.00000 2.07763 4.91635 47
MOI_500 2.07763 0.00000 2.83872 46
MOI_5000 4.91635 2.83872 0.00000 31
numSamples 47 46 31

effect size needed for Power = 0.95 and sig.level = 0.05

start point Distribution (inf)

MOI_50 MOI_500 MOI_5000 numSamples
MOI_50 4.577e+00 4.322e+00 4.315e+00 47
MOI_500 4.322e+00 4.044e+00 3.953e+00 46
MOI_5000 4.315e+00 3.953e+00 3.613e+00 31
numSamples 47 46 31

Here are the figures side by side

Following is the violin graph representing the distribution of start point

The Aim

This document includes double variable figures associated with samples. For all parameters we investigate either the entire set of infections (i.e both “infection” and “infection & lysis”), or we only investigate the “infection & lysis” cases. For each graph we plot density and point versions.

The investigated parameter couples are

1.) Midpoint vs Slope 2.) Slope vs Maximum 3.) Midpoint vs Maximum

Midpoint vs Slope

Slope vs Maximum

Midpoint vs Maximum